Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921262.1_cds_XP_016470250.1_62722
CDS Infomation

[gene=LOC107792543] [db_xref=GeneID:107792543] [protein=E3 ubiquitin-protein ligase COP1-like] [protein_id=XP_016470250.1] [location=complement(join(2655..2795,2881..3036,4257..4335,4685..4750,4854..5011,7018..7377,7740..7895,8540..8617,12217..12513))] [gbkey=CDS]
Sequence

ATGGTGGAAAGTTCGATTGGGGGAGTAGTGCCAGCAGTGAAGGGGTCAGTGAGGGTGGGG
GGTAAAGAGGAGGGTGGTGGTAGTGTAAGGGATGAAGATGAAACAGAATGGGAATTGGAT
AGGGAATTGTTGTGTCCAATTTGTATGCAGATTATAAAGGATGCATTTTTAACTTCCTGT
GGCCATAGTTTTTGCTATATGTGTATAATCACTCACCTTCACAATAAGAGTGATTGTCCT
TGTTGTTCTCATTATCTTACCACTAGCCAACTCTACCCTAATTTCCTTCTAGACAAGCTA
CTGAAGAAGACATCTGCTCGTCAGATTTCAAAAACTGCATCTCCTGTTGAACAATTTCGT
CATTCATTGGAACAGGGTTGTGATGTATCAATTAAGGAGCTGGACGCTCTATTGTCGATG
TTGTCAGAGAGAAAGAGGAAATTGGAGCAGGAAGAAGCAGAGCGAAATATGCAAATTCTG
CTAGACTTCTTACAAATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAGGTGCAAAAT
GATCTGCAATACATCAAAGAGGACATAAATTCAGTGGAGAGACATAGAATAGACCTATAC
CGAGCTAGGGACCGGTACTCAATGAAGCTTCGAATGCTAGTAGATGATCCAATTGGGAAA
AAACCTTGGTCTTCATCCACTGATAGGAACTTTGGTGGTCTTTTCTCCACTTCAAGGAAT
GCACCTGGAGGATTACCTACTGGAAACTTGACATACAAAAACGTGGAAGGCAAAGCTCAA
ATAAGCTCTCCTGGACCACATAGAAAAGATAATTCTATCAGTGAATTGAATTCACAACAT
ATGAGTCAATCAGGTCTGGCTGTGGTGAGGAAGAAGCGTGTAAATGCACAGTTCAATGAT
CTCCAAGAATGTTACTTGCAAAAGAGACGTCTATTGGCGAACAAATCGCATGTTAAGGAG
GAAAAGGACGTAGATGTCATAAAAAGAGAAGGTTACAGTGCAGGACTAGAAGATTTCCAG
TCTGTACTTAGCACTTTCACTCGTTATAGTCGGTTAAGAGTCATTGCTGAGCTTCGGCAT
GGGGATCTTTTTCACTCAGCCAATATCGTGTCAAGCATTGAATTTGATCGTGATGATGAG
TTGTTTGCTACTGCTGGAGTTTCACGGCGTATAAAAGTTTTTGACTTCTCTTCGGTTGTA
AATGAACCTGCAGATGTGCATTGCCCTGTTGTCGAAATGTCAACTCGTTCTAAGCTGAGC
TGCTTGAGCTGGAATAAGTATACCAAGAACCACATAGCAAGTAGCGATTATGATGGAATA
GTAACTGTATGGGATGTGACCACTAGACAGAGTGTGATGGAATATGAAGAGCATGAGAAA
CGGGCATGGAGTGTTGATTTTTCACGCACAGACCCCTCGATGCTTGTATCTGGCAGTGAT
GATTGTAAGGTATTAAAGGATTATTTCTCACTTGTCAAACACAAGTCTTAA

Peptide Sequence

PEP ID

XP_016470250.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase COP1-like [Nicotiana tabacum]
Sequence

MVESSIGGVVPAVKGSVRVGGKEEGGGSVRDEDETEWELDRELLCPICMQIIKDAFLTSC
GHSFCYMCIITHLHNKSDCPCCSHYLTTSQLYPNFLLDKLLKKTSARQISKTASPVEQFR
HSLEQGCDVSIKELDALLSMLSERKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQN
DLQYIKEDINSVERHRIDLYRARDRYSMKLRMLVDDPIGKKPWSSSTDRNFGGLFSTSRN
APGGLPTGNLTYKNVEGKAQISSPGPHRKDNSISELNSQHMSQSGLAVVRKKRVNAQFND
LQECYLQKRRLLANKSHVKEEKDVDVIKREGYSAGLEDFQSVLSTFTRYSRLRVIAELRH
GDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKLS
CLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTDPSMLVSGSD
DCKVLKDYFSLVKHKS

Transcript Sequence

Gene sequence data has not been registered.